Update:
Announcement Service Public
Given Up (extended outro)
QWERTY (Summer Sonic 06)
With You
Lying From You (new intro with 1st verse of Figure.09)
Breaking The Habit (no intro, acapella outro)
Numb
Easier To Run
In Pieces
Pushing Me Away (Studio Version)
Papercut (without strings intro)
Crawling (with Reanimation Intro and HHH acapella)
Leave Out All The Rest
What I've Done
In The End
And One
A Place For My Head (2004 version)
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No More Sorrow (with some Guitar improvisation as intro, ending drums directly go into -> BIO)
Bleed It Out (Bourdon Solo at beginning and singalong and outro)
Faint (Extended Outro)
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No Roads Left
One Step Closer (Reanimation Bridge, Extended Outro)