The only ones released on CD were Given Up and two different No More Sorrow performances. The others that were released were digital bonuses that are DRM protected.
I believe What I've Done, No More Sorrow and Given Up from AOL Sessions were Best Buy bonuses, What I've Done is an album-only iTunes bonus and No More Sorrow had its own promo CD that came with MTM on its release at several retailers. Breaking the Habit & What I've Done were the Walmart bonuses from the Walmart soundcheck.
Given Up and No More Sorrow from the BIO and SOTD singles were from the "Third Encore Sessions", though I believe all of them were performed at Third Encore (their rehearsal studio).
EDIT: Here is a list of all of them:
Given Up (Third Encore Session) [bleed It Out CD single/MTM Tour Edition]
No More Sorrow (Third Encore Session) [shadow of the Day CD single]
What I've Done (AOL Session) [iTunes/Best Buy digital bonus]
No More Sorrow (AOL Session) [best Buy digital bonus/Promo CD]
Given Up (AOL Session) [best Buy digital bonus]
Breaking the Habit (Walmart Session) [Walmart digital bonus]
What I've Done (Walmart Session) [Walmart digital bonus]