I'd have them play No More Sorrow 24 times, and an improvised jam session as an encore.
MAKE THIS HAPPEN.
Hahaha, but seriously, I would want to look over the guitar tunings on the songs first (I understand that Meteora has many songs in different tunings) so that Brad doesn't have to change guitars between every song (as someone who writes material in no fewer than five different tunings, on 6, 7 AND 8-string guitars, I know how annoying this can be).
My setlist would probably focus on heavier material from all three albums. I have always preferred their heavier tunes to the softer experiments on their last album.
I'd start with Wake/Given Up, and I would have Mike play those little improvisations he was doing in the verses for a while.
Then they'd break into No More Sorrow and In Pieces.
After that, a smattering of tunes from Meteora and Hybrid Theory. Not sure what order, but there'd be songs like Runaway, With You, Easier To Run, Figure.09, Don't Stay, A Place For My Head, New Divide.
Somewhere in the middle of all that I'd throw in Valentine's Day and Blackbirds just to bring the tone down and give a bit of lighter-waving room.
The last song would be The Little Things Give You Away, because I picture that as being a closing song (was kind of weirded out by the fact that it was in the middle of Road To Revolution). The encore would be The Catalyst.
It's not set-in-stone, but that's pretty much all I'd have them play to make me happy